STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_2016PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cpr:CPR_1877 single-strand binding domain protein. (222 aa)    
Predicted Functional Partners:
Clos_2026
KEGG: cdf:CD3250 hypothetical protein.
 
     0.847
Clos_1831
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cdf:CD0713 putative adenosylcobamide-dependent radical SAM superfamily protein.
  
    0.791
Clos_0062
TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: amt:Amet_0084 DNA polymerase III, delta prime subunit.
  
 
 
 0.769
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.769
Clos_0583
KEGG: cdf:CD3396 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein.
   
 
 0.758
Clos_2007
Hypothetical protein; KEGG: cpr:CPR_1870 small, acid-soluble spore protein, alpha/beta family.
  
     0.747
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
  
 0.741
Clos_0284
PFAM: Peptidoglycan-binding LysM; KEGG: amt:Amet_4605 peptidoglycan-binding LysM.
  
   
 0.736
rpsB
PFAM: ribosomal protein S2; KEGG: drm:Dred_1978 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
   
  0.729
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
   
 
 0.725
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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