STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_2116PFAM: Domain of unknown function DUF1893; KEGG: bfr:BF4297 putative TonB-dependent outer membrane receptor. (140 aa)    
Predicted Functional Partners:
Clos_2115
Hypothetical protein.
       0.697
Clos_1216
KEGG: cbo:CBO0467 membrane protein.
 
     0.648
Clos_2117
PFAM: membrane-bound metal-dependent hydrolase; KEGG: cdf:CD1288 putative membrane-bound metal-dependent hydrolase.
 
     0.568
Clos_2114
PFAM: RNA binding S1 domain protein; KEGG: cno:NT01CX_0180 S1 RNA binding domain; Belongs to the CvfB family.
       0.565
mobA-3
Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor.
       0.480
Clos_2234
KEGG: btk:BT9727_1599 hypothetical protein.
  
     0.427
Clos_2112
PFAM: protein of unknown function DUF322; KEGG: cbo:CBO1887 hypothetical protein.
       0.423
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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