STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_2427PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: cbo:CBO3179 hypothetical protein. (254 aa)    
Predicted Functional Partners:
Clos_2106
TIGRFAM: cyanophycin synthetase; PFAM: phosphoribosylglycinamide synthetase; cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; RimK domain protein ATP-grasp; KEGG: tte:TTE2785 UDP-N-acetylmuramyl tripeptide synthase.
  
  
 0.678
Clos_0155
PFAM: cell wall hydrolase/autolysin; KEGG: bha:BH0966 N-acetylmuramoyl-L-alanine amidase (sporulation mother cell wall hydrolase).
     
 0.662
Clos_1373
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: cdf:CD2656 stage V sporulation protein D (sporulation specific penicillin-binding protein).
      
 0.641
Clos_2547
PFAM: Peptidoglycan-binding domain 1 protein; Peptidoglycan-binding LysM; KEGG: tte:TTE2219 LysM-repeat proteins and domains.
 
  
 0.593
Clos_0237
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: amt:Amet_4657 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
     
 0.548
Clos_0284
PFAM: Peptidoglycan-binding LysM; KEGG: amt:Amet_4605 peptidoglycan-binding LysM.
 
   
 0.540
Clos_0281
TIGRFAM: SpoIID/LytB domain; PFAM: cell wall hydrolase/autolysin; KEGG: amt:Amet_4611 SpoIID/LytB domain protein.
 
  
 0.530
Clos_0686
Diguanylate cyclase with PAS/PAC sensor; KEGG: cbo:CBO1213 signaling protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: PAS domain containing protein.
     
 0.515
Clos_0834
KEGG: dvl:Dvul_0418 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
     
 0.515
Clos_2712
KEGG: cbo:CBO2602 malate/lactate dehydrogenase.
     
 0.515
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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