STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_2431PFAM: periplasmic binding protein; KEGG: dsy:DSY1002 hypothetical protein. (351 aa)    
Predicted Functional Partners:
Clos_2428
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1005 hypothetical protein.
 
 
 0.975
Clos_2429
PFAM: transport system permease protein; KEGG: dsy:DSY1004 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.974
Clos_2430
PFAM: transport system permease protein; KEGG: dsy:DSY1003 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.973
Clos_2810
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_3768 iron compound ABC transporter, ATP-binding protein.
 
 
 0.826
Clos_0320
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC01197 ferric enterobactin transport ATP-binding protein fepC.
 
 
 0.795
Clos_0312
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1448 ferric enterobactin transport ATP-binding protein FepC.
 
 
 0.733
Clos_2812
PFAM: transport system permease protein; KEGG: bcz:BCZK3494 iron(III) dicitrate transport system permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.666
Clos_2811
PFAM: transport system permease protein; KEGG: bce:BC3736 iron(III) dicitrate transport system permease protein fecC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.646
Clos_0950
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0746 iron compound ABC transporter, ATP-binding protein, putative.
 
 
 0.625
Clos_0196
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1472 iron(III) ABC transporter, ATP-binding protein.
  
 
 0.563
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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