STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_2482PFAM: protein of unknown function DUF327; KEGG: cth:Cthe_2106 protein of unknown function DUF327. (148 aa)    
Predicted Functional Partners:
Clos_2481
KEGG: cth:Cthe_0760 hypothetical protein.
 
     0.799
Clos_2523
KEGG: cth:Cthe_2246 anti-sigma-28 factor, FlgM.
 
 
   0.782
Clos_2524
KEGG: csc:Csac_1661 hypothetical protein.
 
     0.780
Clos_2478
PFAM: flagellar protein FliS; KEGG: mta:Moth_0766 flagellar protein FliS.
 
 
 0.768
Clos_1485
PFAM: flagellar hook-length control protein; KEGG: cth:Cthe_0471 flagellar hook-length control protein.
  
     0.740
Clos_2522
KEGG: cth:Cthe_2245 hypothetical protein.
 
     0.737
Clos_1483
TIGRFAM: flagellar export protein FliJ; KEGG: cth:Cthe_0469 flagellar export protein FliJ.
 
     0.728
Clos_0913
KEGG: ctc:CTC00335 hypothetical protein.
 
     0.725
Clos_2277
KEGG: cth:Cthe_2695 hypothetical protein.
  
     0.716
Clos_1511
PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 protein of unknown function DUF342.
  
     0.698
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.