STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_2541KEGG: dsy:DSY1696 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Clos_2542
PFAM: MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter.
  
    0.591
Clos_0237
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: amt:Amet_4657 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
  
 0.536
Clos_1953
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cbo:CBO1192 pyruvate-flavodoxin oxidoreductase.
  
  
 0.531
Clos_1579
KEGG: tte:TTE1329 hypothetical protein.
 
 
 
 0.510
Clos_0448
KEGG: tte:TTE2375 hypothetical protein.
   
 
 0.509
Clos_2418
PFAM: Shikimate/quinate 5-dehydrogenase; KEGG: tte:TTE2374 hypothetical protein.
   
 
 0.509
Clos_2230
Transposase; KEGG: swo:Swol_1055 transposase.
  
     0.485
Clos_0709
KEGG: pth:PTH_0277 hypothetical membrane protein.
  
     0.428
Clos_2537
PFAM: extracellular solute-binding protein family 1; KEGG: cno:NT01CX_1229 bacterial extracellular solute-binding protein, putative.
       0.424
Clos_2538
Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cno:NT01CX_1228 spermidine/putrescine ABC transporter, permease protein 2.
       0.424
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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