STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Clos_2763Hypothetical protein. (420 aa)    
Predicted Functional Partners:
Clos_2764
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bsu:BG13019 RNA polymerase ECF-type sigma factor.
  
   0.827
Clos_1132
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: fnu:FN1258 C4-dicarboxylate-binding protein.
   
 
 0.645
Clos_2762
PFAM: pentapeptide repeat protein; KEGG: cac:CAC0073 uncharacterized protein, ortholog of YYBG B.subtilis.
       0.478
Clos_2765
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Methyltransferase type 11; Methyltransferase type 12; KEGG: cac:CAC2451 SoxR family transcriptional regulator fused to SAM-dependent methyltransferase.
       0.438
Your Current Organism:
Alkaliphilus oremlandii
NCBI taxonomy Id: 350688
Other names: A. oremlandii OhILAs, Alkaliphilus oremlandii OhILAs, Alkaliphilus oremlandii str. OhILAs, Alkaliphilus oremlandii strain OhILAs, Clostridium oremlandii OhILAs, Clostridium sp. OhILAs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.