STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQB41740.1Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (532 aa)    
Predicted Functional Partners:
KQB41742.1
Pectin methylesterase.
 
     0.824
KQB38939.1
Pectin methylesterase.
 
     0.724
KQB41749.1
Pectinesterase.
 
  
  0.720
KQB39132.1
Pectinesterase.
 
  
  0.713
KQB39097.1
Pectate lyase.
 
     0.708
KQB39131.1
G-D-S-L family lipolytic protein.
  
     0.707
KQB39098.1
Rhamnogalacturonan acetylesterase.
 
     0.660
RCH33_815
Glycoside hydrolase; Belongs to the glycosyl hydrolase 28 family.
  
     0.578
KQB38936.1
Putative rhamnogalacturonan acetylesterase.
  
     0.529
KQB41743.1
Pectate lyase.
 
     0.528
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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