STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQB40156.1Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. (270 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase.
 
  
 0.810
KQB36978.1
Exodeoxyribonuclease III.
  
    0.650
der
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.649
KQB40155.1
Putative hydrolase or acyltransferase (alpha/beta hydrolase superfamily).
       0.540
KQB40153.1
NGG1p interacting factor 3 protein, NIF3; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
       0.414
KQB40154.1
Zn-ribbon protein; Possibly nucleic-acid binding protein.
       0.410
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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