STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQB40217.1Muconate cycloisomerase. (336 aa)    
Predicted Functional Partners:
KQB40218.1
2-amino-3-ketobutyrate coenzyme A ligase.
 
     0.873
KQB40216.1
Hypothetical protein.
       0.746
KQB40219.1
DUF1456 domain containing protein.
       0.648
KQB40215.1
Excinuclease ABC subunit B.
       0.526
KQB38980.1
Mandelate racemase/muconate lactonizing protein.
  
  
  0.420
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.