STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQB38929.1Alpha-L-rhamnosidase-like protein Glycoside hydrolase family 106. (907 aa)    
Predicted Functional Partners:
KQB38936.1
Putative rhamnogalacturonan acetylesterase.
  0.891
KQB38938.1
Putative rhamnogalacturonan acetylesterase.
 
  0.853
KQB38931.1
Putative unsaturated glucuronyl hydrolase.
 
     0.763
KQB38152.1
Lipoprotein.
  
 
  0.738
KQB38113.1
Glycogen debranching enzyme.
 
     0.695
KQB40213.1
DUF1593 domain containing protein.
  
  0.687
KQB38151.1
SusC/RagA family TonB-linked outer membrane protein.
  
     0.681
KQB38127.1
RagB/SusD family protein.
  
 
  0.668
KQB38928.1
WD40-like beta Propeller containing protein.
 
  
  0.655
KQB37031.1
Glycosyl hydrolase, family 88.
 
     0.650
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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