Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KQB38951.1Outer membrane assembly protein. (875 aa)    
Predicted Functional Partners:
KQB41965.1
DUF490 domain containing protein.
  
  
 0.780
KQB41832.1
Hypothetical protein.
  
     0.649
KQB44495.1
Hypothetical protein.
  
     0.623
RCH33_489
DUF3822 domain containing protein.
  
     0.612
KQB40760.1
Hypothetical protein.
  
     0.530
RCH33_854
Integral membrane protein CcmA involved in cell shape determination.
  
     0.530
KQB40768.1
Hypothetical protein.
  
     0.528
KQB40207.1
TonB-dependent receptor.
  
     0.517
KQB40232.1
Transcription termination factor Rho.
  
     0.494
RCH33_874
Lipoprotein NlpD.
  
     0.489
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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