STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQB36912.1Transcriptional regulator, AraC family. (292 aa)    
Predicted Functional Partners:
KQB36913.1
Alpha-L-fucosidase.
 
     0.801
KQB39848.1
Transcriptional regulator, AraC family.
  
     0.649
RCH33_227
Alpha-L-fucosidase.
  
     0.644
KQB37966.1
Transcriptional regulator, AraC family.
  
     0.567
RCH33_884
DNA-binding domain-containing protein, AraC-type.
  
     0.465
RCH33_193
GPI anchored protein.
  
     0.447
RCH33_703
Signal transduction histidine kinase.
     
 0.445
RCH33_824
Helix-turn-helix-domain containing protein AraC type.
  
   0.437
RCH33_400
Alpha-L-fucosidase.
  
     0.436
KQB36914.1
Protein containing DUF718 domain.
       0.433
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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