Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCH33_271Transcriptional regulator, GntR family. (472 aa)    
Predicted Functional Partners:
KQB40223.1
Glutamate synthase family protein.
     
  0.877
RCH33_272
Putative isomerase yddE.
 
    0.831
KQB44113.1
Glycine dehydrogenase [decarboxylating]; Belongs to the GcvP family.
   
 
 0.789
RCH33_336
D-lactate dehydrogenase.
    
 0.731
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
 
 0.722
RCH33_270
Hypothetical protein.
       0.588
KQB40153.1
NGG1p interacting factor 3 protein, NIF3; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
   
    0.534
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.425
KQB41891.1
4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.422
RCH33_826
Dihydrodipicolinate synthetase; Belongs to the DapA family.
  
  
  0.415
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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