Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RCH33_285 | RCH33_286 | Integral membrane sensor signal transduction histidine kinase. | Two-component system-Response regulator. | 0.958 |
RCH33_285 | RCH33_287 | Integral membrane sensor signal transduction histidine kinase. | ABC transporter related protein. | 0.458 |
RCH33_285 | RCH33_288 | Integral membrane sensor signal transduction histidine kinase. | DinB family protein. | 0.463 |
RCH33_286 | RCH33_285 | Two-component system-Response regulator. | Integral membrane sensor signal transduction histidine kinase. | 0.958 |
RCH33_286 | RCH33_287 | Two-component system-Response regulator. | ABC transporter related protein. | 0.465 |
RCH33_286 | RCH33_288 | Two-component system-Response regulator. | DinB family protein. | 0.493 |
RCH33_287 | RCH33_285 | ABC transporter related protein. | Integral membrane sensor signal transduction histidine kinase. | 0.458 |
RCH33_287 | RCH33_286 | ABC transporter related protein. | Two-component system-Response regulator. | 0.465 |
RCH33_287 | RCH33_288 | ABC transporter related protein. | DinB family protein. | 0.682 |
RCH33_287 | RCH33_289 | ABC transporter related protein. | Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family. | 0.492 |
RCH33_288 | RCH33_285 | DinB family protein. | Integral membrane sensor signal transduction histidine kinase. | 0.463 |
RCH33_288 | RCH33_286 | DinB family protein. | Two-component system-Response regulator. | 0.493 |
RCH33_288 | RCH33_287 | DinB family protein. | ABC transporter related protein. | 0.682 |
RCH33_288 | RCH33_289 | DinB family protein. | Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family. | 0.548 |
RCH33_289 | RCH33_287 | Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family. | ABC transporter related protein. | 0.492 |
RCH33_289 | RCH33_288 | Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family. | DinB family protein. | 0.548 |