Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RCH33_3Putative periplasmic protein. (160 aa)    
Predicted Functional Partners:
RCH33_4
Ankyrin repeat-containing protein.
 
     0.958
RCH33_2
Oxidoreductase FAD-binding domain Oxidoreductase NAD-binding domain Flavodoxin.
 
     0.953
RCH33_1
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.807
KQB42948.1
Hypothetical protein.
 
     0.669
KQB42949.1
TonB-dependent receptor plug.
  
     0.529
KQB41775.1
Hypothetical protein.
  
     0.451
RCH33_5
Secreted hyalin domain protein; Likely involved in carbohydrate binding or cell-adhesion.
       0.430
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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