STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQB44246.1Peptidase M23B. (564 aa)    
Predicted Functional Partners:
KQB44247.1
TonB-dependent receptor, plug.
       0.727
KQB44245.1
Mis12-Mtw1 protein family.
 
     0.620
KQB44244.1
Cell division protein ZapA.
       0.598
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.582
RCH33_104
LysM-repeat protein.
 
 
 0.556
RCH33_346
Putative lipoprotein carrier protein LolA.
  
    0.508
RCH33_509
Cell wall endopeptidase, family M23/M37.
  
     0.507
KQB39016.1
S-adenosyl-methyltransferase MraW.
  
     0.481
RCH33_7
Hypothetical protein.
  
     0.465
KQB41965.1
DUF490 domain containing protein.
  
     0.438
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.