Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KQB44248.1Putative lipoprotein. (240 aa)    
Predicted Functional Partners:
KQB42933.1
Hypothetical protein.
  
     0.633
KQB44266.1
Hypothetical protein.
  
     0.633
KQB38992.1
ABC transporter, ATP-binding protein.
  
     0.609
KQB37912.1
DUF4271 domain containing protein.
  
     0.593
RCH33_667
Hypothetical protein.
  
     0.546
KQB44247.1
TonB-dependent receptor, plug.
       0.528
KQB40759.1
DUF839 domain containing protein.
  
     0.510
KQB40666.1
DUF4258 domain containing protein.
  
     0.508
KQB44249.1
DUF2971 domain containing protein.
  
     0.504
KQB36867.1
Cytochrome c551/c552 family protein.
  
     0.488
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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