Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCH33_320BarA sensory histidine kinase (VarS GacS). (1181 aa)    
Predicted Functional Partners:
RCH33_118
Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF).
 
 0.999
KQB42009.1
ABC-type sugar transport system, periplasmic component.
  
 0.999
KQB38227.1
Signal transduction histidine kinase.
 
0.999
RCH33_264
ABC-type sugar transport system, periplasmic component.
  
 0.999
RCH33_45
Sensory box histidine kinase/response regulator.
 
0.999
RCH33_703
Signal transduction histidine kinase.
 
0.999
RCH33_797
Putative transmembrane sensor hybrid histidine kinase.
 
0.999
KQB41739.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
 
0.998
KQB41789.1
Histidine kinase sensor protein.
 
0.998
RCH33_700
Response regulator receiver sensor signal transduction histidine kinase.
 
0.998
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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