Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KQB44041.1Phage shock protein PspC. (563 aa)    
Predicted Functional Partners:
KQB38227.1
Signal transduction histidine kinase.
   
 
 0.913
KQB44040.1
Transcriptional regulator, PadR family.
 
     0.879
KQB44042.1
Putative lipoprotein.
 
  
 0.873
RCH33_320
BarA sensory histidine kinase (VarS GacS).
   
 
 0.849
RCH33_797
Putative transmembrane sensor hybrid histidine kinase.
   
 
 0.817
KQB38091.1
Membrane protein.
  
    0.742
KQB44043.1
DUF2807 domain containing protein.
 
     0.670
KQB44039.1
Tic20 domain containing protein.
  
    0.652
RCH33_703
Signal transduction histidine kinase.
   
 
 0.602
KQB40150.1
Histidine kinase.
  
   0.565
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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