STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQB44063.1N-acetylglucosaminyltransferase. (368 aa)    
Predicted Functional Partners:
KQB44064.1
RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.834
KQB38052.1
RemB protein.
  
     0.762
RCH33_721
Glutamate dehydrogenase.
  
     0.746
KQB44177.1
Capsular exopolysaccharide biosynthesis protein.
 
  
 0.739
KQB41437.1
O-Antigen ligase.
 
   
 0.738
KQB37986.1
Geranylgeranylglyceryl phosphate synthase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P).
  
     0.738
RCH33_304
Putative O-methyltransferase.
  
     0.733
KQB42935.1
Hypothetical protein.
 
     0.720
RCH33_461
UbiA prenyltransferase.
 
     0.696
KQB44176.1
Polysaccharide export outer membrane protein.
 
   
 0.669
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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