Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RCH33_366Conjugative transposon protein TraI. (210 aa)    
Predicted Functional Partners:
RCH33_367
TraG family conjugation system ATPase.
 
     0.937
RCH33_365
Conjugative transposon protein TraJ.
 
   
 0.920
RCH33_364
Conjugative transposon TraK protein.
 
   
 0.913
RCH33_368
Conjugative transposon protein TraE.
 
     0.868
RCH33_363
Conjugative transposon TraM protein.
 
     0.859
RCH33_362
Conjugate transposon protein TraN.
 
     0.854
RCH33_385
Protein found in conjugate transposon.
 
     0.798
RCH33_384
TraB protein.
 
     0.786
RCH33_387
Hypothetical protein.
  
     0.774
RCH33_388
Relaxase/mobilization nuclease family protein.
  
     0.774
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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