STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCH33_567Riboflavin synthase alpha chain. (196 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
 0.999
RCH33_653
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
 
 0.999
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
 
 0.998
KQB37025.1
Riboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family.
 
 
 0.966
hisI
Phosphoribosyl-AMP cyclohydrolase / Phosphoribosyl-ATP pyrophosphatase; In the N-terminal section; belongs to the PRA-CH family.
  
    0.742
KQB44254.1
50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
   
    0.656
RCH33_568
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
       0.612
RCH33_569
Putative metal-binding protein; Possibly nucleic-acid binding protein.
       0.473
rpmF
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
       0.469
KQB41889.1
Flavin reductase like domain protein.
    
  0.421
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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