Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCH33_90Cna B 2 multi-domain protein. (255 aa)    
Predicted Functional Partners:
KQB44101.1
Ferric siderophore transport system, periplasmic binding protein TonB.
  
  0.811
RCH33_685
Putative TonB-dependent receptor.
  
    0.780
RCH33_133
Ribonuclease Z.
  
     0.770
RCH33_704
Putative lipoprotein.
  
     0.769
RCH33_995
OMP b-brl 2 domain containing protein.
  
     0.768
KQB41965.1
DUF490 domain containing protein.
  
     0.766
KQB44386.1
Phenol MetA deg domain containing protein.
  
     0.766
KQB40129.1
DUF4252 domain containing protein.
  
     0.758
RCH33_786
Putative transcriptional regulator with HTH domain-containing protein.
  
     0.756
KQB38034.1
Sporulation domain protein.
  
     0.752
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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