STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCH33_960Putative transcriptional regulator. (628 aa)    
Predicted Functional Partners:
RCH33_373
Type i restriction enzyme ecobi specificity protein.
  
    0.565
RCH33_376
Putative transcriptional regulator.
  
  
 
0.558
RCH33_961
Hypothetical protein.
       0.554
KQB40670.1
ATP-dependent endonuclease of the OLD family-like protein.
  
    0.496
KQB44082.1
ATP-dependent OLD family endonuclease.
  
    0.496
RCH33_959
Transcriptional regulator, GntR family.
       0.429
Your Current Organism:
Flavobacterium daejeonense
NCBI taxonomy Id: 350893
Other names: DSM 17708, F. daejeonense, Flavobacterium daejeonense Kim et al. 2006, Flavobacterium sp. GH1-10, Flavobacterium sp. LB-W, KACC 11422, strain GH1-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.