STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM70239.1Transcriptional regulator, AsnC family protein; COG1522 Transcriptional regulators. (144 aa)    
Predicted Functional Partners:
EDM70240.1
Putative Ornithine decarboxylase; COG0019 Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
     0.741
EDM73264.1
Hypothetical protein.
  
     0.598
EDM73303.1
Hypothetical protein.
  
     0.591
valS-2
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.591
EDM71901.1
Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
  
 
 0.583
EDM72188.1
Transcriptional regulator, AsnC family protein.
  
     0.570
EDM69786.1
Proline dehydrogenase transcriptional activator.
  
     0.561
EDM71900.1
Glutamate uptake regulatory protein, putative; COG1522 Transcriptional regulators.
  
     0.470
EDM72187.1
Transcriptional regulator, AsnC family protein; COG1522 Transcriptional regulators.
  
     0.448
EDM70241.1
Dehydrogenase, putative; COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
  
    0.429
Your Current Organism:
Roseobacter sp. AzwK3b
NCBI taxonomy Id: 351016
Other names: R. sp. AzwK-3b, Roseobacter sp. AzwK-3b
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