STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM71861.1Ornithine cyclodeaminase; COG1454 Alcohol dehydrogenase, class IV. (387 aa)    
Predicted Functional Partners:
EDM70497.1
Aldehyde-alcohol dehydrogenase, putative; COG1012 NAD-dependent aldehyde dehydrogenases.
 0.965
EDM70476.1
COG1062 Zn-dependent alcohol dehydrogenases, class III; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
   
 0.866
EDM71489.1
Dehydrogenase, putative.
   
 0.866
EDM71387.1
COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
  
 
 0.820
EDM70382.1
3-oxoacid CoA-transferase, subunit B.
  
 
 0.744
tolB
Translocation protein TolB precursor; COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
  
 
 0.733
EDM71785.1
NADH dehydrogenase (quinone).
  
 
 0.730
EDM73215.1
COG0067 Glutamate synthase domain 1.
   
 
 0.722
EDM70110.1
5'-methylthioadenosine phosphorylase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.603
EDM69454.1
3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.603
Your Current Organism:
Roseobacter sp. AzwK3b
NCBI taxonomy Id: 351016
Other names: R. sp. AzwK-3b, Roseobacter sp. AzwK-3b
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