STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM72040.1Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (414 aa)    
Predicted Functional Partners:
EDM72041.1
AcrB/AcrD/AcrF family protein, putative; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.986
EDM70088.1
Permease, putative; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 0.981
EDM70227.1
Type I secretion outer membrane protein, TolC family, putative; COG1538 Outer membrane protein.
 
 0.872
EDM72309.1
Putative acriflavin resistence protein; COG0841 Cation/multidrug efflux pump.
 
 0.828
EDM70735.1
Acriflavin resistance protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.814
EDM70074.1
RND family efflux transporter; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.801
EDM71533.1
Cation/multidrug efflux pump, RND family protein; COG0841 Cation/multidrug efflux pump.
 
 0.796
EDM69621.1
Type I secretion outer membrane protein, TolC family; COG1538 Outer membrane protein.
 
 0.794
EDM72826.1
Cation/multidrug efflux pump, RND superfamily protein; COG0841 Cation/multidrug efflux pump.
 
 0.790
EDM72221.1
Outer membrane efflux protein.
   
 0.787
Your Current Organism:
Roseobacter sp. AzwK3b
NCBI taxonomy Id: 351016
Other names: R. sp. AzwK-3b, Roseobacter sp. AzwK-3b
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