Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RCIX1000Predicted ABC-type transport system, periplasmic component. (344 aa)    
Predicted Functional Partners:
RCIX1002
ABC-type transport system, ATPase component.
 
  
 0.994
RCIX1001
Putative ABC-type transport system, permease component (ABC-3 family).
 
  
 0.991
RCIX1003
Hypothetical protein similar to formylmethanofuran dehydrogenase, subunit E; Conserved in M. hungatei ZP_00869293.1.
 
     0.913
tnp-14
Transposase (IS4).
  
     0.672
tnp-16
Transposase (IS4).
  
     0.672
tnp-23
Transposase (IS4).
  
     0.665
tnp-27
Transposase (IS4).
  
     0.664
tnp-5
Transposase (IS4).
  
     0.663
rps14p
30S ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles.
  
  
 0.632
LRC575
Putative Fe-dependent transcription repressor.
  
  
 0.618
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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