Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX1001Putative ABC-type transport system, permease component (ABC-3 family). (276 aa)    
Predicted Functional Partners:
RCIX1002
ABC-type transport system, ATPase component.
 
 
 0.999
RCIX1000
Predicted ABC-type transport system, periplasmic component.
 
  
 0.991
RCIX1003
Hypothetical protein similar to formylmethanofuran dehydrogenase, subunit E; Conserved in M. hungatei ZP_00869293.1.
 
     0.944
LRC575
Putative Fe-dependent transcription repressor.
  
  
 0.776
rnh
Ribonuclease H (RNase H); Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
     
 0.683
gluP
ABC-type glutamate import system, permease component.
 
 
 0.628
RCIX1004
Putative nucleoside 2-deoxyribosyltransferase.
 
     0.601
LRC287
Putative serine/threonine protein kinase; Identical to orf3 of fosmid clone 3D10mr4.
       0.573
RCIX1349
Fe-dependent transcription repressor (FeoA family).
 
  
 0.571
LRC289
Conserved hypothetical protein; Identical to orf4 of fosmid clone 3D10mr4.
       0.564
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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