STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1002ABC-type transport system, ATPase component. (245 aa)    
Predicted Functional Partners:
RCIX1001
Putative ABC-type transport system, permease component (ABC-3 family).
 
 
 0.999
RCIX1000
Predicted ABC-type transport system, periplasmic component.
 
  
 0.998
RCIX1003
Hypothetical protein similar to formylmethanofuran dehydrogenase, subunit E; Conserved in M. hungatei ZP_00869293.1.
 
     0.891
rpl14p
50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
   
 0.551
RRC164
ABC-type transport system, ATPase component.
 
    0.546
LRC575
Putative Fe-dependent transcription repressor.
  
  
 0.531
LRC111
Putative transporter (NRAMP family).
  
  
 0.530
RCIX1004
Putative nucleoside 2-deoxyribosyltransferase.
       0.526
RCIX1349
Fe-dependent transcription repressor (FeoA family).
  
  
 0.509
dnaK
Chaperonin Hsp70; Acts as a chaperone.
 
   
 0.500
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.