STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1003Hypothetical protein similar to formylmethanofuran dehydrogenase, subunit E; Conserved in M. hungatei ZP_00869293.1. (135 aa)    
Predicted Functional Partners:
RCIX1000
Predicted ABC-type transport system, periplasmic component.
 
     0.910
ftr
Formylmethanofuran--tetrahydromethanopterin formyltransferase; Catalyzes the reversible transfer of a formyl group from formylmethanofuran (formyl-MFR) to tetrahydromethanopterin (H(4)MPT) so as to produce 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) and methanofuran (MFR); Belongs to the FTR family.
     
  0.900
fdh
NAD-dependent formaldehyde dehydrogenase.
     
  0.900
RCIX1002
ABC-type transport system, ATPase component.
 
     0.891
RCIX1001
Putative ABC-type transport system, permease component (ABC-3 family).
 
     0.863
cdhA
Carbon monoxide dehydrogenase/acetyl-CoA synthase complex, alpha subunit; Part of the ACDS complex that catalyzes the reversible cleavage of acetyl-CoA, allowing autotrophic growth from CO(2). The alpha-epsilon subcomponent functions as a carbon monoxide dehydrogenase.
     
  0.650
cdhB
Carbon monoxide dehydrogenase/acetyl-CoA synthase complex, epsilon subunit.
     
  0.650
fdhA-1
Formate dehydrogenase, alpha subunit.
     
  0.650
fdhB-1
Formate dehydrogenase, beta subunit.
     
  0.650
fdhB-2
Formate dehydrogenase, beta subunit.
     
  0.650
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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