STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1004Putative nucleoside 2-deoxyribosyltransferase. (146 aa)    
Predicted Functional Partners:
RCIX1001
Putative ABC-type transport system, permease component (ABC-3 family).
 
     0.604
RCIX1003
Hypothetical protein similar to formylmethanofuran dehydrogenase, subunit E; Conserved in M. hungatei ZP_00869293.1.
       0.542
RCIX1002
ABC-type transport system, ATPase component.
       0.526
RCIX1089
Conserved hypothetical protein.
  
     0.484
RCIX1000
Predicted ABC-type transport system, periplasmic component.
       0.473
LRC449
Putative lysine exporter (LysE family).
  
     0.411
RCIX2106
Conserved hypothetical protein.
 
     0.403
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.