Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1068Putative transcription regulator (TetR family). (211 aa)    
Predicted Functional Partners:
RCIX1071
Conserved hypothetical protein; Putative antibiotic-transport integral membrane leucine and valine rich protein ABC-type transporter.
 
     0.698
RCIX1070
Conserved hypothetical protein; Putative antibiotic-transport integral membrane leucine and valine rich protein ABC-type transporter.
 
     0.692
RCIX1069
ABC-type transport system, ATPase component.
 
   
 0.645
LRC452
Hypothetical protein.
  
   
 0.569
RCIX2504
Hypothetical protein.
 
     0.569
RRC479
Hypothetical protein.
  
     0.566
RRC20
Hypothetical protein.
  
   
 0.546
RCIX1518
Predicted oligopeptide transporter (OPT superfamily).
  
   
 0.544
RCIX414
Hypothetical protein; Similar to RCIX409 and RCIX412.
  
     0.540
RCIX409
Hypothetical protein; Similar to RCIX412 and RCIX414.
  
     0.536
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.