Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX1071Conserved hypothetical protein; Putative antibiotic-transport integral membrane leucine and valine rich protein ABC-type transporter. (245 aa)    
Predicted Functional Partners:
RCIX1070
Conserved hypothetical protein; Putative antibiotic-transport integral membrane leucine and valine rich protein ABC-type transporter.
  
  0.997
RCIX1069
ABC-type transport system, ATPase component.
 
  
  0.988
RCIX1068
Putative transcription regulator (TetR family).
 
     0.698
RCIX1074
Conserved hypothetical protein.
 
     0.546
RCIX84
Hypothetical protein.
  
     0.455
RCIX1230
Putative transcription regulator (MarR family).
  
     0.441
RCIX1228
Conserved hypothetical protein.
  
     0.425
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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