Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1093Hypothetical protein. (328 aa)    
Predicted Functional Partners:
RCIX1094
Hypothetical protein.
       0.777
lonB
ATP-dependent protease La; Belongs to the peptidase S16 family.
 
  
 0.644
RCIX219
Predicted glucosyltransferase (group 1).
 
 
 
 0.534
paaI
Putative phenylacetic acid degradation protein.
    
 0.527
RCIX1862
Conserved GTP-binding protein (Ras family).
   
 0.474
LRC542
Glycosyltransferase (group 1).
   
 
 0.473
LRC543
Glycosyltransferase (group 1).
   
 
 0.473
LRC544
Glycosyltransferase (group 1).
   
 
 0.473
LRC545
Putative glycosyltransferase (group 1).
   
 
 0.473
LRC547
Glycosyltransferase (group 1).
   
 
 0.473
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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