STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1093Hypothetical protein. (328 aa)    
Predicted Functional Partners:
RCIX1094
Hypothetical protein.
       0.778
RCIX219
Predicted glucosyltransferase (group 1).
 
 
 
 0.753
LRC542
Glycosyltransferase (group 1).
   
 
 0.721
LRC543
Glycosyltransferase (group 1).
   
 
 0.721
LRC544
Glycosyltransferase (group 1).
   
 
 0.721
LRC545
Putative glycosyltransferase (group 1).
   
 
 0.721
LRC547
Glycosyltransferase (group 1).
   
 
 0.721
LRC549
Glycosyltransferase (group 1).
   
 
 0.721
LRC551
Putative glycosyltransferase (group 1).
   
 
 0.721
RCIX1060
Putative glycosyltransferase (group 1).
   
 
 0.721
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.