Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RCIX1104Putative proteinase. (630 aa)    
Predicted Functional Partners:
RCIX267
Putative alkaline serine protease; Belongs to the peptidase S8 family.
  
 
 
0.804
LRC18
Putative proteinase; Similarities with orf17 of fosmid clone 4B7mr3; Belongs to the peptidase S8 family.
  
 
 
0.803
RRC199
Predicted alkaline serine protease; Similar to orf17 of fosmid clone 4B7mr3; Belongs to the peptidase S8 family.
  
 
 
0.793
RCIX1105
Hypothetical protein.
      
0.773
RCIX1335
Predicted regulator of chromosome condensation.
 
 
 0.654
RCIX1585
Predicted regulator of chromosome condensation.
 
 
 0.654
RCIX492
Predicted regulator of chromosome condensation.
 
 
 0.654
RCIX807
Predicted regulator of chromosome condensation; Similar to RCIX819.
 
 
 0.653
RCIX1761
Predicted regulator of chromosome condensation.
 
 
 0.651
RCIX819
Predicted regulator of chromosome condensation; Similar to RCIX807.
 
 
 0.650
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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