STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1120Putative signal sequence peptidase; Similar to orf41 of fosmid clone 1B6mr2. (183 aa)    
Predicted Functional Partners:
atpE
A(1)A(0)-type ATP synthase, subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
  
 0.781
atpF
A(1)A(0)-type ATP synthase, subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
  
  0.770
RCIX2680
Conserved hypothetical protein.
  
   
 0.770
LRC541
Transmembrane oligosaccharyltransferase.
  
  
 0.755
LRC265
Conserved hypothetical protein.
  
    0.750
LRC539
Transmembrane oligosaccharyltransferase.
  
  
 0.749
RCIX408
Conserved hypothetical protein.
  
     0.743
RCIX407
Conserved hypothetical protein.
  
   
 0.737
serB-1
Putative phosphoserine phosphatase.
  
     0.734
RCIX1020
Conserved hypothetical protein.
  
     0.729
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.