STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gsp-5Putative bacterial type II secretion system protein. (616 aa)    
Predicted Functional Partners:
gsp-4
Putative bacterial type II secretion system protein.
 
  
 0.944
gsp-7b
Putative bacterial type II secretion system protein, C-terminal fragment.
 
  
 0.753
RCIX111
Hypothetical protein.
       0.752
gsp-9
Putative bacterial type II secretion system protein.
 
  
 0.746
gsp-1
Putative bacterial type II secretion system protein.
 
  
 0.713
gsp-7a
Putative bacterial type II secretion system protein, N-terminal fragment.
 
  
 0.708
RCIX114
Conserved hypothetical protein.
 
     0.661
LRC499
Conserved hypothetical protein; Similar to Archaeoglobus fulgidus hypo AAB90187.1.
 
  
 0.645
RCIX115
Conserved hypothetical protein; Similarities with kaiC (circadian clock regulatory protein kinase) and Rad55 (RecA-superfamily ATPase implicated in signal transduction).
 
   
 0.637
RCIX110
Hypothetical protein.
  
    0.570
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.