STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1148Conserved hypothetical protein; Similar to protein TTHB188 of thermus thermophilus. (533 aa)    
Predicted Functional Partners:
RCIX1150
Conserved hypothetical protein; Similar to protein TTHB190 of thermus thermophilus.
 
     0.949
cas3
Putative CRISPR-associated helicase; Similar to protein TTHB187 of thermus thermophilus.
 
     0.948
RCIX1151
Conserved hypothetical protein; Similar to protein TTHB191 of thermus thermophilus.
 
     0.943
RCIX1152
Predicted CRISPR-associated protein; Similar to protein TTHB192 of thermus thermophilus.
 
     0.943
cas1
Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.938
cas2
Predicted CRISPR-associated protein; Similar to protein TTHB194 of thermus thermophilus.
 
     0.938
RCIX1149
Conserved hypothetical protein; Similar to protein TTHB189 of thermus thermophilus.
 
     0.937
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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