Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX1174Putative acetoin utilization protein (histone deacetylase superfamily). (331 aa)    
Predicted Functional Partners:
LRC70
Putative DNA/RNA helicase (SNF2 family).
   
 0.929
RRC248
Hypothetical protein.
   
 0.901
RRC278
Hypothetical protein.
   
 0.901
RCIX2180
ABC-type transport system, ATPase component.
  
 0.885
cdc48-1
Putative cell division cycle protein 48.
 
 
 0.882
cdc48-3
Cell division cycle protein 48.
 
 
 0.881
cdc48-2
Cell division cycle protein 48.
 
 
 0.881
rpl40e
50S ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 0.878
smc
Chromosome segregation/partition protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.877
RCIX2249
ATPase (AAA superfamily); Belongs to the AAA ATPase family.
   
 0.865
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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