STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xthAExodeoxyribonuclease III; Gene synonym: exoA. (257 aa)    
Predicted Functional Partners:
RCIX2501
Predicted endonuclease/exonuclease.
  
  
 
0.911
pcn
Putative DNA polymerase sliding clamp (proliferating cell nuclear antigen); Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. Belongs to the PCNA family.
  
 0.884
nfo
Putative endonuclease IV.
   
 
 0.882
RCIX2536
Putative DNA glycosylase.
   
 0.832
RCIX2726
Conserved hypothetical protein.
   
 
 0.827
RRC63
Predicted endonuclease III.
  
 0.806
LRC482
Conserved hypothetical protein.
  
 0.777
RCIX927
Predicted endonuclease III.
  
 0.777
LRC234
Putative small nuclear ribonucleoprotein (snRNP) Sm-like protein; Belongs to the snRNP Sm proteins family.
   
 0.733
RRC101
Small nuclear riboprotein-like protein.
   
 0.733
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.