Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1235Conserved hypothetical protein. (224 aa)    
Predicted Functional Partners:
RRC338
Conserved hypothetical protein.
  
     0.706
RCIX2200
Conserved hypothetical protein.
  
     0.595
RCIX950
Conserved hypothetical protein.
  
     0.582
RCIX2643
Conserved hypothetical protein.
  
     0.546
RCIX1237
Putative signal transduction histidine kinase.
       0.543
RCIX1141
Conserved hypothetical protein.
  
     0.535
RCIX1209
Hypothetical protein.
  
     0.513
RRC150
Putative hydrolase.
  
     0.503
LRC541
Transmembrane oligosaccharyltransferase.
 
     0.488
RCIX733
Predicted secreted protein.
  
     0.484
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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