Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX1241Conserved hypothetical protein. (502 aa)    
Predicted Functional Partners:
RCIX1242
2(4Fe-4S) ferredoxin-domain protein.
 
 
 0.999
RCIX1245
Conserved hypothetical protein; Belongs to the UPF0280 family.
 
   
 0.986
asd
Aspartate-semialdehyde dehydrogenase.
    
 0.944
thrA
Homoserine dehydrogenase; Gene synonyms: hom, metL.
     
 0.903
metE
Putative methylcobalamin:homocysteine methyltransferase.
     
 0.901
metY
O-acetyl-L-homoserine sulfhydrylase.
     
  0.900
ahcY
S-adenosyl-L-homocysteine hydrolase; Catalyzes the hydrolysis of S-inosyl-L-homocysteine (SIH) to L-homocysteine (Hcy) and inosine. Likely functions in a S-adenosyl-L- methionine (SAM) recycling pathway from S-adenosyl-L-homocysteine (SAH) produced from SAM-dependent methylation reactions. Can also catalyze the reverse reaction in vitro, i.e. the synthesis of SIH from Hcy and inosine; Belongs to the adenosylhomocysteinase family.
     
  0.900
RCIX1240
Conserved integral membrane protein (MarC family).
       0.451
RCIA89
Hypothetical protein; Similar to orf19 of fosmid clone 4B7mr3.
       0.410
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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