STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1246Putative glycosyltransferase (family 2). (233 aa)    
Predicted Functional Partners:
RCIX1984
Putative glycosyltransferase (family 2).
 
 
 0.550
RCIX1247
Hypothetical protein.
       0.529
LRC548
Putative glycosyltransferase (family 2).
 
  
 0.528
RCIX1878
Putative glycosyltransferase (group 1).
 
  
 0.500
RCIX195
Glycosyltransferase (group 1).
 
  
 0.489
RCIX1261
Glycosyltransferase (group 1).
 
  
 0.477
galE-2
Putative UDP-glucose 4-epimerase.
 
  
 0.471
LRC551
Putative glycosyltransferase (group 1).
 
  
 0.466
LRC544
Glycosyltransferase (group 1).
 
  
 0.463
rfbB-3
dTDP-glucose 4,6-dehydratase; Identical to orf2 of fosmid clone 3D10mr4 gene synonyms: rmlB, cpsN.
 
  
 0.460
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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