Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX1246Putative glycosyltransferase (family 2). (233 aa)    
Predicted Functional Partners:
LRC548
Putative glycosyltransferase (family 2).
 
  
 0.606
RCIX1921
Aminotransferase (DegT family); Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.572
RCIX1247
Hypothetical protein.
       0.529
RCIX1976
Signal transduction serine/threonine kinase.
  
 
 0.518
RCIX213
Predicted glycosyltransferase (group 1).
 
  
 0.513
RCIX1984
Putative glycosyltransferase (family 2).
 
  
 0.508
RCIX1878
Putative glycosyltransferase (group 1).
 
  
 0.485
RCIX195
Glycosyltransferase (group 1).
 
  
 0.474
RCIX1261
Glycosyltransferase (group 1).
 
  
 0.462
ugd
UDP-glucose 6-dehydrogenase.
  
  
 0.453
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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