STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1276Putative phosphoesterase. (495 aa)    
Predicted Functional Partners:
dacZ
Conserved hypothetical protein; Diadenylate cyclase that catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP is a second messenger for intracellular signal transduction involved in the control of important regulatory processes such as osmoregulation.
   
 0.634
RCIX690
Conserved hypothetical protein.
 
    0.603
RRC524
Conserved hypothetical protein; Belongs to the UPF0212 family.
  
     0.601
RCIX1640
Conserved hypothetical protein.
  
     0.553
gsp-4
Putative bacterial type II secretion system protein.
  
     0.543
RCIX571
Predicted transcription regulator.
  
     0.520
gsp-9
Putative bacterial type II secretion system protein.
  
     0.503
RCIX1844
Conserved hypothetical protein.
  
     0.500
RCIX1209
Hypothetical protein.
  
     0.496
scpA
Putative chromosome segregation/condensation protein A.
 
    0.490
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.