Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX13104Fe-4S ferredoxin-domain protein. (385 aa)    
Predicted Functional Partners:
tmk-1
Putative thymidylate kinase.
       0.791
LRC222
Conserved hypothetical Fe-S cluster-binding protein, N-terminal fragment.
  
     0.740
RRC51
Hypothetical protein.
  
     0.687
fdx3-2
2(4Fe-4S) ferredoxin.
 
     0.555
RCIX1308
Conserved hypothetical protein; Conserved only in haloarcula.
       0.494
RCIX1934
Conserved hypothetical protein.
  
     0.493
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.461
tyrA
Putative prephenate dehydrogenase.
       0.454
RCIX364
2(4Fe-4S) ferredoxin-domain protein.
 
     0.454
RRC203
2(4Fe-4S) ferredoxin-domain protein.
 
     0.414
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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