Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
RCIX1335Predicted regulator of chromosome condensation. (451 aa)    
Predicted Functional Partners:
RCIX1337
Hypothetical protein.
       0.773
RCIX1338
Conserved hypothetical protein.
       0.773
ppiB
Peptidyl-prolyl cis-trans isomerase B (cyclophilin type).
    
 0.681
RCIA98
Hypothetical protein.
       0.658
RCIX1104
Putative proteinase.
 
 
 0.654
RCIX1976
Signal transduction serine/threonine kinase.
   
 0.654
RCIX481
Putative hydrogenase membrane component (EchB-like).
    
 
 0.641
echF
Ech hydrogenase, subunit F.
   
 
 0.614
RCIX482
Putative hydrogenase 2(4Fe-4S) ferredoxin component (EchF-like).
   
 
 0.614
LRC18
Putative proteinase; Similarities with orf17 of fosmid clone 4B7mr3; Belongs to the peptidase S8 family.
  
 
 0.599
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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