Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1338Conserved hypothetical protein. (281 aa)    
Predicted Functional Partners:
RCIX1335
Predicted regulator of chromosome condensation.
       0.773
RCIX1337
Hypothetical protein.
       0.773
RCIX783
Predicted ABC-type transport system, permease component.
 
     0.688
RCIX1724
Hypothetical protein.
 
    0.669
RCIA98
Hypothetical protein.
       0.658
RCIX784
Hypothetical protein.
 
    0.654
RCIX789
Hypothetical protein.
 
    0.654
RCIX801
Hypothetical protein.
 
    0.593
RCIX1410
Hypothetical protein.
 
    0.566
RCIX1727
ABC-type transport system, ATPase component.
 
 
 0.528
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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