STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1342Hypothetical protein. (277 aa)    
Predicted Functional Partners:
RCIX1341
Hypothetical protein.
       0.746
RCIX2729
Hypothetical protein.
  
     0.521
RCIX1046
Conserved hypothetical protein; Belongs to the PDCD5 family.
  
     0.502
rps17e
30s ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.
  
     0.491
RCIX2666
Predicted metallo-beta-lactamase.
  
     0.468
RCIX1343
Hypothetical protein.
      
0.467
LRC592
Hypothetical protein.
  
     0.463
RCIX1997
Hypothetical protein.
  
     0.445
gcp-a
O-sialoglycoprotein endopeptidase, N-terminal fragment; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is a component of the KEOPS complex that is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Kae1 likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity.
  
     0.436
RRC32
Hypothetical protein.
  
     0.415
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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